i2b2: Informatics for Integrating Biology & the Bedside - A National Center for Biomedical Computing
Training Predoctoral
2005 Summer Scholars Program   & i2b2

Bioinformatics and Integrative Genomics (BIG) Summer Scholars Program

2009 Summer Scholars Program in Bioinformatics and Integrative Genomics (BIG):

 

Course Director:  Susanne Churchill, Ph.D.

Teaching Assistant:  Adam Davis, Ph.D.

Course Coordinator: Barbara Mawn

You will spend all day Wednesday and Friday in your lab and Monday, Tuesday, Thursdays after class in your lab, except where related offerings are of interest. Note some classes do not observe the Tues/Thursday morning regular schedule.  Lab times are not shown on this schedule.

 

 

Time

 

Topic

 

Lecturer

Location

 

 

 

 

 

 

 

Week 1

 

 

 

 

 

 

Wednesday, June 10

9:30-10:30

 

Orientation Breakfast

 

Churchill

NRB 255

 

11:00-12:00

 

Introduction

 

Kohane

NRB 255

 

12:00-1:30

 

Lunch

 

 

NRB 255

 

Various

 

Appointments with Mentors

 

 

 

Thursday, June 11

9:00-10:00

 

Environmental Health and Safety Special Session for those working in NRB

 

 

NRB

Friday, June 12

9:30-10:30

 

Case Study: Major Depressive Disorder

 

Perlis

NRB 258

 

11:00-12:00

 

Communications Tutorial

 

Jhaveri

NRB 258

Week 2

 

 

 

 

 

 

Wednesday, June 17

9:30-10:30

 

Case Study:  Huntington’s Disease

 

MacDonald

NRB 258

 

11:00-12:00

 

Mining Patient Records

 

Weber

NRB 258

 

12:00-1:30

 

Lunch (w/Dr. Weber)

 

 

NRB 258

Friday, June 19

9:30-10:30

 

Treasure Hunt: Using Genomic Databases

 

Kohane

NRB 258

 

11:00-12:30

 

Communications Tutorial

 

Jhaveri

NRB 258

Week 3

 

 

 

 

 

 

Tuesday, June 23

5:30-7:30

 

Harvard Medical School Summer Program Dinner

 

 

Courtyard Café @ 200 Longwood

Wednesday, June 24

9:30-10:30

 

 

 

 

NRB 255

 

11:00-12:00

 

Conversation w/George Church

 

Church

NRB 255

 

12:00-1:30

 

Lunch

 

 

NRB 255

 

6:00-8:00

 

Networking

 

Burns-White

DFCI 1620

Friday, June 26

9:30-10:30

 

Transcription Factors

 

Bulyk

NRB 258

 

11:00-12:30

 

Communications Tutorial

 

Jhaveri

NRB 258

Week 4

 

 

 

 

 

 

Wednesday, July 1

9:30-10:30

 

Evolutionary Genetics

 

Sunyaev

NRB 258

 

11:00-12:00

 

Conversation w/

 

Stultz

NRB 258

 

12:00-1:30

 

Lunch (w/Dr. Stultz)

 

 

NRB 258

Friday,  July 3

9:30-10:30

 

Cancelled (Holiday)

 

 

 

Week 5

 

 

 

 

 

 

Monday, July 6

9:30-11:00

 

Communications Tutorials

 

Jhaveri

NRB 254

Wednesday, July 8

9:30-10:30

 

Next Generation Sequencing

 

Park

NRB 254

 

11:00-12:00

 

Case Study:  Lymphoma (and the Beginnings of Personalized Medicine)

 

Golub

NRB 254

 

12:00-1:30

 

Lunch (w/Dr. Golub)

 

 

NRB 254

Friday, July 10

9:30-10:30

`

Conversation w/

 

Altshuler

NRB 258

 

11:00-12:30

 

Communications Tutorial

 

Jhaveri

NRB 258

 

Week 6

 

 

 

 

 

 

Wednesday,  July 15

9:30-10:30

 

Proteomics and Advances in Mass Spec

 

Marto

NRB 254

 

11:00-12:00

 

Biosurveillance

 

Brownstein

NRB 254

 

12:00-1:30

 

Lunch w/Dr. Brownstein

 

 

NRB 254

Friday, July 17

9:30-10:30

 

Case Study: Asthma

 

Weiss

NRB 258

 

11:00-12:30

 

Communications Tutorial

 

Jhaveri

NRB 258

Week 7

 

 

 

 

 

 

Monday, July 20

9:30-10:30

 

Microarrays

 

Kohane

NRB 254

Wednesday, July 22

9:30-10:30

 

Clinical Trials

 

Wei

NRB 254

 

11:00-12:00

 

Case Study: Diabetes

 

Patti

NRB 254

 

12:00-1:30

 

Lunch

 

  

NRB 254

Friday, July 24

9:30-10:30

 

Case Study: Deafness

 

Rehm

NRB 258

Week 8

 

 

 

 

 

 

Wednesday, July 29

9:30-10:30

 

Case Study:  Hypertension

 

Williams

NRB 254

 

11:00-12:00

 

 

 

 

NRB 254

 

12:00-1:30

 

Lunch     

 

 

NRB 254

Friday, July 31

9:30-10:30

 

Case Study:  Rheumatoid Arthritis

 

Plenge

NRB 258

Week 9

 

 

 

 

 

 

TBD

 

 

Practice Presentations

 

Jhaveri

NRB   

Monday, August 3

5:00-?

 

Career Counselling w/pizza

 

Kohane

NRB 254

Wednesday, August 5

9:00-12:30

 

Student Project Presentations

 

 

NRB 254

 

12:30-1:30

 

Celebration Lunch

 

 

NRB 254

 

  6:30

 

Celebration Dinner at Elephant Walk

 

 

 

i2b2

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